Add genome and annotations to IGV from Galaxy
Authors: 
Delphine Lariviere
Bérénice Batut
Helena Rasche
Saskia Hiltemannhall-of-fameAdd Contributions!




- Upload a FASTA file with the reference genome and a GFF3 file with its annotation in the history (if not already there)
- Install IGV (if not already installed)
- Launch IGV on your computer
- Expand the FASTA dataset with the genome in the history
- Click on the
local
indisplay with IGV
to load the genome into the IGV browser - Wait until all Dataset status are
ok
-
Close the window
An alert
ERROR Parameter "file" is required
may appear. Ignore it. - Expand the GFF3 dataset with the annotations of the genome in the history
- Click on the
local
indisplay with IGV
to load the annotation into the IGV browser -
Switch to the IGV instance
The annotation track should appear. Be careful that all files have the same genome ID
Persistent URL
Resource purlPURL: https://gxy.io/GTN:F00231Still have questions?
Gitter Chat Support
Galaxy Help Forum