Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

First Time Using Galaxy

A quick look at using Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Galaxy
A short introduction to Galaxy
español
    Video Languages

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy Basics for everyone
Galaxy Basics for genomics

Go a bit further

Explore the Galaxy a bit further after you've finished the basics.

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
From peaks to genes
How to reproduce published Galaxy analyses
Introduction to Genomics and Galaxy
NGS data logistics
Options for using Galaxy

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -p 8080:80 quay.io/galaxy/introduction-training

NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.

It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoDave Clements avatar Dave Clements

Contributors

This material was contributed to by:

Sarah Peter avatar Sarah Peterorcid logoBjörn Grüning avatar Björn GrüningAlaa Elghamry avatar Alaa ElghamryAnne Pajon avatar Anne Pajonorcid logoAnna Syme avatar Anna Symeorcid logoClemens Blank avatar Clemens Blankorcid logoHelena Rasche avatar Helena Rascheorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMichele Maroni avatar Michele Maroniorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanAndrea Bagnacani avatar Andrea Bagnacaniorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDave Clements avatar Dave ClementsJoachim Wolff avatar Joachim WolffAnton Nekrutenko avatar Anton Nekrutenkoorcid logoNadia Goué avatar Nadia GouéOlha Nahorna avatar Olha Nahornaorcid logoDaniel Blankenberg avatar Daniel BlankenbergChristopher Barnett avatar Christopher Barnettorcid logoSaskia Hiltemann avatar Saskia HiltemannYongbin Li avatar Yongbin LiTeresa Müller avatar Teresa MüllerDilmurat Yusuf avatar Dilmurat Yusuforcid logoMelanie Föll avatar Melanie Föllorcid logoBérénice Batut avatar Bérénice BatutMarius van den Beek avatar Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.