GMOD
Tutorials from the world of the Generic Model Organism Database (GMOD)
GMOD is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data, many of which are directly interoperable.
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.JBrowse 1
Learn to use JBrowse v1 here.
MAKER
Genome Annotation with MAKER.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Genome annotation with Maker (short) | |||||
Genome annotation with Maker |
InterMine
InterMine is a data warehouse you can query for interesting features and data.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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InterMine integration with Galaxy |
Apollo v2
Apollo is a collaborative, real time genome annotation editor.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Refining Genome Annotations with Apollo (prokaryotes) | |||||
Refining Genome Annotations with Apollo (eukaryotes) |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche Anthony BretaudeauContributors
This material was contributed to by:
Alexandre Cormier Mateo Boudet Robert Meller Helena Rasche Nathan Dunn Delphine Lariviere Ava Hoffman Natalie Kucher Torsten Seemann Candace Savonen Frederick Tan Bérénice Batut Miaomiao Zhou Avans Hogeschool Anna Syme Katherine Cox Erwan Corre Yo Yehudi Anton Nekrutenko Saskia Hiltemann Bazante Sanders Daniela Butano Simon Gladman Laura Leroi Anthony Bretaudeau Stéphanie Robin Elizabeth HumphriesFunding
These individuals or organisations provided funding support for the development of this resource