Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Delphine Lariviere

Stéphanie Robin

Jonathan Kreplak

Helena Rasche

Alexandre Cormier

Anton Nekrutenko

Valentin Loux

Gildas Le Corguillé

Nicola Soranzo

Bazante Sanders

Esteban Perez-Wohlfeil

William Durand

Kenji Fujihara

Torsten Seemann

Laura Leroi

Anthony Bretaudeau

Teresa Müller

Cristóbal Gallardo

Simon Gladman

Guillaume Gautreau

Niall Beard

Simon Bray

Anna Syme

Paul Zierep

Erwan Corre

Bérénice Batut

Deepti Varshney

Hélène Chiapello

Ekaterina Polkh

Romane LIBOUBAN

Björn Grüning

Felicitas Kindel

Twishi Gulati

Nathan Dunn

Maria Doyle

Anika Erxleben

Saskia Hiltemann

Mateo Boudet

Jasper Ouwerkerk

Miaomiao Zhou

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

IFB

ELIXIR Europe

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.