Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Twishi Gulati

Deepti Varshney

Bazante Sanders

Alexandre Cormier

Bérénice Batut

Paul Zierep

Anton Nekrutenko

Mateo Boudet

Anthony Bretaudeau

Cristóbal Gallardo

Jonathan Kreplak

Simon Bray

Anna Syme

Delphine Lariviere

Nathan Dunn

Romane LIBOUBAN

Saskia Hiltemann

Stéphanie Robin

Felicitas Kindel

Ekaterina Polkh

Jasper Ouwerkerk

Simon Gladman

Anika Erxleben

Helena Rasche

Laura Leroi

Teresa Müller

Miaomiao Zhou

Nicola Soranzo

Björn Grüning

Erwan Corre

William Durand

Gildas Le Corguillé

Kenji Fujihara

Esteban Perez-Wohlfeil

Torsten Seemann

Niall Beard

Maria Doyle

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

IFB

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics