Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Community SIG
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Gildas Le Corguillé avatar Gildas Le CorguilléAssunta DeSanto avatar Assunta DeSantoLoraine Guéguen avatar Loraine GuéguenSimon Bray avatar Simon BrayEstelle Ancelet avatar Estelle Anceletorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoPaul Zierep avatar Paul ZierepHervé Ménager avatar Hervé Ménagerorcid logoJohn Chilton avatar John ChiltonNitesh Turaga avatar Nitesh Turagaorcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn GrüningYouri Hoogstrate avatar Youri HoogstrateAysam Guerler avatar Aysam GuerlerRoss Lazarus avatar Ross Lazarusorcid logoClemens Blank avatar Clemens BlankCyril Monjeaud avatar Cyril MonjeaudClare Sloggett avatar Clare Sloggettorcid logoJohn Davis avatar John DavisLain Pavot avatar Lain Pavotorcid logoSaskia Hiltemann avatar Saskia HiltemannErik Schill avatar Erik Schillorcid logoNicola Soranzo avatar Nicola SoranzoStéphanie Legras avatar Stéphanie Legrasorcid logoCameron Hyde avatar Cameron HydeDave B. avatar Dave B.orcid logoMartin Čech avatar Martin ČechMatthias Bernt avatar Matthias BerntDannon Baker avatar Dannon Bakerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource