Bacterial genomics and AMR detection
This track explains the basic steps to (1) process, assemble, annotate a bacterial genome and (2) detect Antimicrobial resistance (AMR) genes in bacterial genomes using Galaxy.
Organisers(s) | Bérénice Batut Clea Siguret |
Instructor(s) | Bérénice Batut Clea Siguret Saim Momin Engy Nasr Meltem Kutnu Paul Zierep |
Bacterial genomics
Preparation, assembly and annotation of a bacterial genome. If you encounter any issue please ask us in this Slack channel.
AMR detection
Detect Antimicrobial resistance (AMR) genes in an assembled bacterial genome. If you encounter any issue please ask us in this Slack channel.
Lesson | Slides | Hands-on | Recordings |
---|---|---|---|
Identification of AMR genes in an assembled bacterial genome |
Pathogen detection
Pathogen detection. If you encounter any issue please ask us in this Slack channel.
Lesson | Slides | Hands-on | Recordings |
---|---|---|---|
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition |