Trimmomatic: flexible read trimming tool for Illumina NGS data

toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.39+galaxy00.39+galaxy0

Metadata

Servers Offering this Tool

UseGalaxy.eu (0.39+galaxy0)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

0.39+galaxy0
0.38.1
0.38.0
0.36.5
0.32.3

EDAM Operations

operation_3192

EDAM Topics

Relevant Tutorials

Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data
Transcriptomics / De novo transcriptome reconstruction with RNA-Seq
Transcriptomics / De novo transcriptome assembly, annotation, and differential expression analysis
Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs