MultiQC: aggregate results from bioinformatics analyses into a single report

toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0

Metadata

Links

bio.tools: MultiQC

EDAM Operations

Validation

EDAM Topics

Observed Tool Versions

Within GTN tutorials

1.27+galaxy0

1.24.1+galaxy0

1.11+galaxy1

1.11+galaxy0

1.9

1.9+galaxy1

1.8+galaxy1

1.8+galaxy0

1.7

1.6

1.5.0

1.2.0

Relevant Tutorials

Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Assembly / An Introduction to Genome Assembly
Assembly / Large genome assembly and polishing
Assembly / Unicycler Assembly
Contributing to the Galaxy Training Material / Creating content in Markdown
Ecology / Data submission using ENA upload Tool
Ecology / RAD-Seq Reference-based data analysis
Epigenetics / CUT&RUN data analysis
Genome Annotation / CRISPR screen analysis
Introduction to Galaxy Analyses / NGS data logistics
Introduction to Galaxy Analyses / Very Short Introductions: QC
Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
Microbiome / 16S Microbial analysis with Nanopore data
Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
Sequence analysis / Mapping
Sequence analysis / Quality Control
Single Cell / Pre-processing of Single-Cell RNA Data
Single Cell / Pre-processing of 10X Single-Cell RNA Datasets
Transcriptomics / Genome-wide alternative splicing analysis
Transcriptomics / De novo transcriptome assembly, annotation, and differential expression analysis
Transcriptomics / Pathway analysis with the MINERVA Platform
Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
Transcriptomics / Reference-based RNA-Seq data analysis
Transcriptomics / 1: RNA-Seq reads to counts
Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs
Variant Analysis / M. tuberculosis Variant Analysis