Kraken2: assign taxonomic labels to sequencing reads

toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.3+galaxy12.1.3+galaxy1

Metadata

Servers Offering this Tool

UseGalaxy.eu (2.1.3+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

2.1.3+galaxy1
2.1.1+galaxy1
2.0.8_beta+galaxy0

EDAM Operations

operation_3460

EDAM Topics

Relevant Tutorials

Assembly / Decontamination of a genome assembly
Ecology / Checking expected species and contamination in bacterial isolate
Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing
Microbiome / 16S Microbial analysis with Nanopore data
Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data
Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Variant Analysis / M. tuberculosis Variant Analysis