bcftools norm: Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows

Metadata

Servers Offering this Tool

UseGalaxy.eu (1.9+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 1.9+galaxy1
• 1.15.1+galaxy3

EDAM Operations

• operation_3227
• operation_2409

EDAM Topics

• topic_2885
• topic_3517
• topic_0199
• topic_3516

Relevant Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / Trio Analysis using Synthetic Datasets from RD-Connect GPAP