AnnData Operations: is a Swiss army knife for AnnData files

Metadata

Servers Offering this Tool

UseGalaxy.eu (1.9.3+galaxy0)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 1.9.3+galaxy0
• 1.8.1+galaxy92
• 1.8.1+galaxy91
• 1.8.1+galaxy9
• 1.8.1+galaxy0

EDAM Operations

EDAM Topics

Relevant Tutorials

• Single Cell / Importing files from public atlases
• Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
• Single Cell / Combining single cell datasets after pre-processing
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy
• Single Cell / Converting between common single cell data formats
• Single Cell / Converting NCBI Data to the AnnData Format