MarkDuplicates: examine aligned records in BAM datasets to locate duplicate molecules

Metadata

Servers Offering this Tool

UseGalaxy.eu (3.1.1.0)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 3.1.1.0
• 2.18.2.4
• 2.18.2.3
• 2.18.2.2
• 2.18.2.1

EDAM Operations

EDAM Topics

Relevant Tutorials

• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis
• Introduction to Galaxy Analyses / NGS data logistics
• Transcriptomics / Reference-based RNA-Seq data analysis
• Transcriptomics / 1: RNA-Seq reads to counts
• Variant Analysis / Calling variants in non-diploid systems
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis