Map with BWA-MEM: - map medium and long reads (> 100 bp) against reference genome

Metadata

Servers Offering this Tool

UseGalaxy.eu (0.7.18)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 0.7.18
• 0.7.17.2
• 0.7.17.1

EDAM Operations

• operation_0292
• operation_3211
• operation_3429
• operation_3198

EDAM Topics

• topic_0102

Relevant Tutorials

• Assembly / Chloroplast genome assembly
• Using Galaxy and Managing your Data / Using dataset collections
• Introduction to Galaxy Analyses / NGS data logistics
• Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data
• Sequence analysis / SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• Single Cell / Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data
• Variant Analysis / Calling very rare variants
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / Calling variants in non-diploid systems
• Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
• Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs